Transfer Order Receipt Issues

Hello Guys
I have customized a transport management module for a client. I am utilizing the standard Transfer Order document as the parent document. I have two additional Documents, a dispatch and a Receiving Advice. The dispatch advice posts the shipment and the receiving posts the receipts.

My problem is sometimes the dispatch/receiving advice shows different quantities as compared to what is on the item ledger entry. This leaves some outstanding quantity in my "In-Transit" location.

This happens with clients posting from remote areas with poor connectivity to the server.

Is there any bug on the rollback that will be causing this. What would be the best way to make sure the quantity on the receiving advice matches the posted entries.
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