Problem with stuck transfer order

Kisu

Our client made a transfer order and it seemed that they accidentally deleted the shipment. (Drilled down on the shipped quantity and deleted)

The shipped quantity stayed on the transfer order lines but when you drill down on it it does not show the shipment anymore..

Changing the shipped quantity to zero, deleting the transfer order is not a solution as the inventory value stays and the Lot No is still attached to the Item No.
Fixing this around with item journal does not seems to work, it gives error about item variations.

Nav build is 6.00.32012, does anyone know if there is hotfix for this issue and hopefully a good solution to get this fixed.

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K.S.